# HG changeset patch
# User dchristiany
# Date 1549035000 18000
# Node ID 7b486b0fba4e127749d4f32f5a7ace5678adc996
# Parent  80fc0b28e227c6bf0fd35a4f488bbedbc0dd50c5
planemo upload commit cb633de1f04ef7b7133728909716b6c6594533d1-dirty

diff -r 80fc0b28e227 -r 7b486b0fba4e data_manager/resource_building.py
--- a/data_manager/resource_building.py	Fri Feb 01 10:21:58 2019 -0500
+++ b/data_manager/resource_building.py	Fri Feb 01 10:30:00 2019 -0500
@@ -279,16 +279,15 @@
 # 4. Build protein interaction maps files
 #######################################################################################################
 
-def get_interactant_name(line):
+def get_interactant_name(line,dico):
 
-    if line[0] in dico_geneid_to_gene_name :
-        print line[0]
-        interactant_A = dico_geneid_to_gene_name[line[0]]
+    if line[0] in dico :
+        interactant_A = dico[line[0]]
     else :
         interactant_A = "NA"
 
-    if line[1] in dico_geneid_to_gene_name :
-        interactant_B = dico_geneid_to_gene_name[line[1]]
+    if line[1] in dico :
+        interactant_B = dico[line[1]]
     else :
         interactant_B = "NA"
 
@@ -426,12 +425,9 @@
 
         dico_geneid_to_gene_name={}
         for line in humap_nodes :
-            if check_entrez_geneid(line[5]):
-                if line[5] not in dico_geneid_to_gene_name:
-                    dico_geneid_to_gene_name[line[5]]=[line[4]]
-                else :
-                    if line[4] not in dico_geneid_to_gene_name[line[5]] :
-                        dico_geneid_to_gene_name[line[5]].append(line[4])
+            if check_entrez_geneid(line[4]):
+                if line[4] not in dico_geneid_to_gene_name:
+                    dico_geneid_to_gene_name[line[4]]=line[3]
 
         with requests.Session() as s:
             r = s.get('http://proteincomplexes.org/static/downloads/pairsWprob.txt')
diff -r 80fc0b28e227 -r 7b486b0fba4e data_manager/resource_building.xml
--- a/data_manager/resource_building.xml	Fri Feb 01 10:21:58 2019 -0500
+++ b/data_manager/resource_building.xml	Fri Feb 01 10:30:00 2019 -0500
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.02.01" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2019.02.01.1" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
@@ -19,7 +19,7 @@
         --id_mapping="$database.species"
     #else if $database.database == "PPI"
         --interactome="$database.base.interactome"
-        #if $database.base.interacome == "biogrid"
+        #if $database.base.interactome == "biogrid"
             --species="$database.base.species"
         #end if
     #end if