# HG changeset patch
# User dchristiany
# Date 1540297112 14400
# Node ID 60cb0a5ae6619cdab4a53ceb3e677f7a38a25adc
# Parent  4bb219eee10f8333b2616c0ed028c341302a02f3
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty

diff -r 4bb219eee10f -r 60cb0a5ae661 data_manager/resource_building.py
--- a/data_manager/resource_building.py	Tue Oct 23 08:00:49 2018 -0400
+++ b/data_manager/resource_building.py	Tue Oct 23 08:18:32 2018 -0400
@@ -52,7 +52,7 @@
     tissue_id = tissue_name.replace(" ","_").replace("/","-")
 
     data_table_entry = dict(id=tissue_id, name = tissue_name, value = tissue, path = path)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "protein_atlas")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_protein_atlas")
 
 
 #######################################################################################################
@@ -90,7 +90,7 @@
         w.writerows(uni_dict.items())
         
     data_table_entry = dict(id=tissue_id, name=tissue_name, value = path, tissue = tissue)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "peptide_atlas")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_peptide_atlas")
 
 #function to count the number of observations by uniprot id
 def build_dictionary (csv) :
@@ -221,7 +221,7 @@
     id = species+"_id_mapping_"+ time.strftime("%d-%m-%Y")
 
     data_table_entry = dict(id=id, name = name, value = species, path = path)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "id_mapping")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_id_mapping")
 
 def download_from_uniprot_ftp(file,target_directory) :
     ftp_dir = "pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/"
diff -r 4bb219eee10f -r 60cb0a5ae661 data_manager/resource_building.xml
--- a/data_manager/resource_building.xml	Tue Oct 23 08:00:49 2018 -0400
+++ b/data_manager/resource_building.xml	Tue Oct 23 08:18:32 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2018.10.23.2" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2018.10.23.3" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
diff -r 4bb219eee10f -r 60cb0a5ae661 data_manager_conf.xml
--- a/data_manager_conf.xml	Tue Oct 23 08:00:49 2018 -0400
+++ b/data_manager_conf.xml	Tue Oct 23 08:18:32 2018 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers>
     <data_manager tool_file="data_manager/resource_building.xml" id="resource_building">
-        <data_table name="protein_atlas">
+        <data_table name="proteore_protein_atlas">
             <output>
                 <column name="id"/>
                 <column name="name" />
@@ -15,7 +15,7 @@
                 </column>
             </output>
         </data_table>
-        <data_table name="peptide_atlas">
+        <data_table name="proteore_peptide_atlas">
             <output>
                 <column name="id"/>
                 <column name="name" />
@@ -30,7 +30,7 @@
                 </column>
             </output>
         </data_table>
-        <data_table name="id_mapping">
+        <data_table name="proteore_id_mapping">
             <output>
                 <column name="id" />
                 <column name="name" />