# HG changeset patch
# User dchristiany
# Date 1540296049 14400
# Node ID 4bb219eee10f8333b2616c0ed028c341302a02f3
# Parent  2f153b41b6fe56b98f738b3519be6165f567b208
planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty

diff -r 2f153b41b6fe -r 4bb219eee10f data_manager/resource_building.xml
--- a/data_manager/resource_building.xml	Tue Oct 23 07:43:37 2018 -0400
+++ b/data_manager/resource_building.xml	Tue Oct 23 08:00:49 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2018.10.23" tool_type="manage_data">
+<tool id="data_manager_proteore" name="Get source files for proteore tools" version="2018.10.23.2" tool_type="manage_data">
 <description>
 to create or update reference files for proteore tools
 </description>
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/id_mapping.loc.sample
--- a/tool-data/id_mapping.loc.sample	Tue Oct 23 07:43:37 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,5 +0,0 @@
-#This file lists the locations of reference file for id_converter tool
-#<id>	<name>	<value>	<path>
-#human_id_mapping_01-01-2018	Human (homo sapiens)	human_id_mapping	tool-data/human_id_mapping_file.tsv
-#mouse_id_mapping_01-01-2018	Mouse (Mus musculus)	mouse_id_mapping	tool-data/mouse_id_mapping.tsv
-#rat_id_mapping_01-01-2018	Rat (Rattus norvegicus)	rat_id_mapping	tool-data/rat_id_mapping.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/peptide_atlas.loc.sample
--- a/tool-data/peptide_atlas.loc.sample	Tue Oct 23 07:43:37 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,10 +0,0 @@
-#This file lists the locations name and values of reference files for number of MS/MS observations in a tissue
-#This is a tab separated file (TAB, not 4 spaces !)
-#<id>	<name>	<tissue>	<value>
-#Human_Heart_20-07-2018	Human Heart 20/07/2018	Human_Heart	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Heart_20-07-2018.tsv
-#Human_Liver_20-07-2018	Human Liver 20/07/2018	Human_Liver	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Liver_20-07-2018.tsv
-#Human_Urine_20-07-2018	Human Urine 20/07/2018	Human_Urine	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Urine_20-07-2018.tsv
-#Human_Brain_20-07-2018	Human Brain 20/07/2018	Human_Brain	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Brain_20-07-2018.tsv
-#Human_Kidney_20-07-2018	Human Kidney 20/07/2018	Human_Kidney	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Kidney_20-07-2018.tsv
-#Human_Plasma_20-07-2018	Human Plasma 20/07/2018	Human_Plasma	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Plasma_20-07-2018.tsv
-#Human_CSF_20-07-2018	Human CSF 20/07/2018	Human_CSF	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_CSF_20-07-2018.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/protein_atlas.loc.sample
--- a/tool-data/protein_atlas.loc.sample	Tue Oct 23 07:43:37 2018 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,6 +0,0 @@
-#This file lists the locations name and values of reference files for Get expression data tool
-#This is a tab separated file (TAB, not 4 spaces !)
-#<id>	<name> <value>	<path>
-#HPA_normal_tissue_19-07-2018	HPA normal tissue 19/07/2018	HPA_normal_tissue	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv
-#HPA_pathology_19-07-2018	HPA pathology 19/07/2018	HPA_pathology	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv
-#HPA_full_atlas_19-07-2018	HPA full atlas 19/07/2018	HPA_full_atlas	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/proteore_id_mapping.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/proteore_id_mapping.loc.sample	Tue Oct 23 08:00:49 2018 -0400
@@ -0,0 +1,5 @@
+#This file lists the locations of reference file for id_converter tool
+#<id>	<name>	<value>	<path>
+#human_id_mapping_01-01-2018	Human (homo sapiens)	human_id_mapping	tool-data/human_id_mapping_file.tsv
+#mouse_id_mapping_01-01-2018	Mouse (Mus musculus)	mouse_id_mapping	tool-data/mouse_id_mapping.tsv
+#rat_id_mapping_01-01-2018	Rat (Rattus norvegicus)	rat_id_mapping	tool-data/rat_id_mapping.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/proteore_peptide_atlas.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/proteore_peptide_atlas.loc.sample	Tue Oct 23 08:00:49 2018 -0400
@@ -0,0 +1,10 @@
+#This file lists the locations name and values of reference files for number of MS/MS observations in a tissue
+#This is a tab separated file (TAB, not 4 spaces !)
+#<id>	<name>	<tissue>	<value>
+#Human_Heart_20-07-2018	Human Heart 20/07/2018	Human_Heart	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Heart_20-07-2018.tsv
+#Human_Liver_20-07-2018	Human Liver 20/07/2018	Human_Liver	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Liver_20-07-2018.tsv
+#Human_Urine_20-07-2018	Human Urine 20/07/2018	Human_Urine	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Urine_20-07-2018.tsv
+#Human_Brain_20-07-2018	Human Brain 20/07/2018	Human_Brain	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Brain_20-07-2018.tsv
+#Human_Kidney_20-07-2018	Human Kidney 20/07/2018	Human_Kidney	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Kidney_20-07-2018.tsv
+#Human_Plasma_20-07-2018	Human Plasma 20/07/2018	Human_Plasma	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_Plasma_20-07-2018.tsv
+#Human_CSF_20-07-2018	Human CSF 20/07/2018	Human_CSF	/projet/galaxydev/galaxy/tool-data/peptide_atlas/Human_CSF_20-07-2018.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool-data/proteore_protein_atlas.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/proteore_protein_atlas.loc.sample	Tue Oct 23 08:00:49 2018 -0400
@@ -0,0 +1,6 @@
+#This file lists the locations name and values of reference files for Get expression data tool
+#This is a tab separated file (TAB, not 4 spaces !)
+#<id>	<name> <value>	<path>
+#HPA_normal_tissue_19-07-2018	HPA normal tissue 19/07/2018	HPA_normal_tissue	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19159/dataset_39307_files/HPA_normal_tissue_19-07-2018.tsv
+#HPA_pathology_19-07-2018	HPA pathology 19/07/2018	HPA_pathology	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19160/dataset_39308_files/HPA_pathology_19-07-2018.tsv
+#HPA_full_atlas_19-07-2018	HPA full atlas 19/07/2018	HPA_full_atlas	/projet/galaxydev/galaxy/tool-data/protein_atlas/projet/galaxydev/galaxy/database/jobs_directory/019/19161/dataset_39309_files/HPA_full_atlas_19-07-2018.tsv
diff -r 2f153b41b6fe -r 4bb219eee10f tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Tue Oct 23 07:43:37 2018 -0400
+++ b/tool_data_table_conf.xml.sample	Tue Oct 23 08:00:49 2018 -0400
@@ -1,15 +1,15 @@
 <?xml version="1.0"?>
 <tables>
-    <table name='peptide_atlas' comment_char="#">
+    <table name='proteore_peptide_atlas' comment_char="#">
       <columns>id, name, tissue, value</columns>
-      <file path="tool-data/peptide_atlas.loc"/>
+      <file path="tool-data/proteore_peptide_atlas.loc"/>
     </table>
-    <table name="protein_atlas" comment_char="#">
+    <table name="proteore_protein_atlas" comment_char="#">
       <columns>id, name, value, path</columns>
-      <file path="tool-data/protein_atlas.loc" />
+      <file path="tool-data/proteore_protein_atlas.loc" />
     </table>
-    <table name="id_mapping" comment_char="#">
+    <table name="proteore_id_mapping" comment_char="#">
       <columns>id, name, value, path</columns>
-      <file path="tool-data/id_mapping.loc" />
+      <file path="tool-data/proteore_id_mapping.loc" />
     </table>
 </tables>