diff data_manager/resource_building.py @ 47:7b486b0fba4e draft

planemo upload commit cb633de1f04ef7b7133728909716b6c6594533d1-dirty

--- a/data_manager/resource_building.py	Fri Feb 01 10:21:58 2019 -0500
+++ b/data_manager/resource_building.py	Fri Feb 01 10:30:00 2019 -0500
@@ -279,16 +279,15 @@
 # 4. Build protein interaction maps files
 #######################################################################################################
 
-def get_interactant_name(line):
+def get_interactant_name(line,dico):
 
-    if line[0] in dico_geneid_to_gene_name :
-        print line[0]
-        interactant_A = dico_geneid_to_gene_name[line[0]]
+    if line[0] in dico :
+        interactant_A = dico[line[0]]
     else :
         interactant_A = "NA"
 
-    if line[1] in dico_geneid_to_gene_name :
-        interactant_B = dico_geneid_to_gene_name[line[1]]
+    if line[1] in dico :
+        interactant_B = dico[line[1]]
     else :
         interactant_B = "NA"
 
@@ -426,12 +425,9 @@
 
         dico_geneid_to_gene_name={}
         for line in humap_nodes :
-            if check_entrez_geneid(line[5]):
-                if line[5] not in dico_geneid_to_gene_name:
-                    dico_geneid_to_gene_name[line[5]]=[line[4]]
-                else :
-                    if line[4] not in dico_geneid_to_gene_name[line[5]] :
-                        dico_geneid_to_gene_name[line[5]].append(line[4])
+            if check_entrez_geneid(line[4]):
+                if line[4] not in dico_geneid_to_gene_name:
+                    dico_geneid_to_gene_name[line[4]]=line[3]
 
         with requests.Session() as s:
             r = s.get('http://proteincomplexes.org/static/downloads/pairsWprob.txt')