diff data_manager/resource_building.py @ 12:60cb0a5ae661 draft

planemo upload commit e5e768b479ddc6b36270a1b5b0443a4c80d693bc-dirty

--- a/data_manager/resource_building.py	Tue Oct 23 08:00:49 2018 -0400
+++ b/data_manager/resource_building.py	Tue Oct 23 08:18:32 2018 -0400
@@ -52,7 +52,7 @@
     tissue_id = tissue_name.replace(" ","_").replace("/","-")
 
     data_table_entry = dict(id=tissue_id, name = tissue_name, value = tissue, path = path)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "protein_atlas")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_protein_atlas")
 
 
 #######################################################################################################
@@ -90,7 +90,7 @@
         w.writerows(uni_dict.items())
         
     data_table_entry = dict(id=tissue_id, name=tissue_name, value = path, tissue = tissue)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "peptide_atlas")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_peptide_atlas")
 
 #function to count the number of observations by uniprot id
 def build_dictionary (csv) :
@@ -221,7 +221,7 @@
     id = species+"_id_mapping_"+ time.strftime("%d-%m-%Y")
 
     data_table_entry = dict(id=id, name = name, value = species, path = path)
-    _add_data_table_entry(data_manager_dict, data_table_entry, "id_mapping")
+    _add_data_table_entry(data_manager_dict, data_table_entry, "proteore_id_mapping")
 
 def download_from_uniprot_ftp(file,target_directory) :
     ftp_dir = "pub/databases/uniprot/current_release/knowledgebase/idmapping/by_organism/"