Mercurial > repos > davidvanzessen > vidjil_with_browser
comparison germline/TRGV.fa @ 0:fe4001bdf8d4 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 09 Dec 2014 03:55:01 -0500 |
| parents | |
| children |
comparison
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| -1:000000000000 | 0:fe4001bdf8d4 |
|---|---|
| 1 >M12949|TRGV1*01|Homo sapiens|ORF|V-REGION|174..470|297 nt|1| | | | |297+0=297| |rev-compl| | |
| 2 tcttccaacttggaagggagaacgaagtcagtcaccaggctgactgggtcatctgctgaa | |
| 3 atcacctgtgatcttcctggagcaagtaccttatacatccactggtacctgcaccaggag | |
| 4 gggaaggccccacagtgtcttctgtactatgaaccctactactccagggttgtgctggaa | |
| 5 tcaggaatcactccaggaaagtatgacactggaagcacaaggagcaattggaatttgaga | |
| 6 ctgcaaaatctaattaaaaatgattctgggttctattactgtgccacctgggacagg | |
| 7 >X07206|TRGV10*01|Homo sapiens|ORF|V-REGION|164..474|311 nt|1| | | | |311+0=311| |rev-compl| | |
| 8 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac | |
| 9 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag | |
| 10 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga | |
| 11 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact | |
| 12 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg | |
| 13 tggtgggtggc | |
| 14 >X74798|TRGV10*02|Homo sapiens|ORF|V-REGION|164..471|308 nt|1| | | | |308+0=308| |rev-compl| | |
| 15 ttatcaaaagtggagcagttccagctatccatttccacggaagtcaagaaaagtattgac | |
| 16 ataccttgcaagatatcgagcacaaggtttgaaacagatgtcattcactggtaccggcag | |
| 17 aaaccaaatcaggctttggagcacctgatctatattgtctcaacaaaatccgcagctcga | |
| 18 cgcagcatgggtaagacaagcaacaaagtggaggcaagaaagaattctcaaactctcact | |
| 19 tcaatccttaccatcaagtccgtagagaaagaagacatggccgtttactactgtgctgcg | |
| 20 tgggatta | |
| 21 >Y11227|TRGV11*01|Homo sapiens|ORF|V-REGION|155..463|309 nt|1| | | | |309+0=309| |rev-compl| | |
| 22 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac | |
| 23 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag | |
| 24 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat | |
| 25 tgctcaggtgggaagactaagaaacttgaggtaagtaaaaatgctcacacttccacttcc | |
| 26 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg | |
| 27 attaggcac | |
| 28 >AF159056|TRGV11*02|Homo sapiens|ORF|V-REGION|81990..82298|309 nt|1| | | | |309+0=309| |rev-compl| | |
| 29 cttgggcagttggaacaacctgaaatatctatttccagaccagcaaataagagtgcccac | |
| 30 atatcttggaaggcatccatccaaggctttagcagtaaaatcatacactggtactggcag | |
| 31 aaaccaaacaaaggcttagaatatttattacatgtcttcttgacaatctctgctcaagat | |
| 32 tgctcaggtgggaagactaagaaacttgagataagtaaaaatgctcacacttccacttcc | |
| 33 actttgaaaataaagttcttagagaaagaagatgaggtggtgtaccactgtgcctgctgg | |
| 34 attaggcac | |
| 35 >M13429|TRGV2*01|Homo sapiens|F|V-REGION|166..465|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 36 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa | |
| 37 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag | |
| 38 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa | |
| 39 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg | |
| 40 atactgcgaaatctaattgaaaatgactctggggtctattactgtgccacctgggacggg | |
| 41 >M27337|TRGV2*02|Homo sapiens|(F)|V-REGION|44..340|297 nt|1| | | | |297+0=297| |rev-compl| | |
| 42 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa | |
| 43 atcacttgtgatcttgctgaaggaagtaacggctacatccactggtacctacaccaggag | |
| 44 gggaaggccccacagcgtcttcagtactatgactcctacaactccaaggttgtgttggaa | |
| 45 tcaggagtcagtccagggaagtattatacttacgcaagcacaaggaacaacttgagattg | |
| 46 atactgcaaaatctaattgaaaatgactctggggtctattactgtgccacctgggac | |
| 47 >M13430|TRGV3*01|Homo sapiens|F|V-REGION|169..468|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 48 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa | |
| 49 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag | |
| 50 gggaaggccccacagcgtcttctgtactatgacgtctccaccgcaagggatgtgttggaa | |
| 51 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg | |
| 52 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg | |
| 53 >X04038|TRGV3*02|Homo sapiens|F|V-REGION|339..637|299 nt|1| | | | |299+0=299| |rev-compl| | |
| 54 tcttccaacttggaagggagaacgaagtcagtcaccaggcagactgggtcatctgctgaa | |
| 55 atcacttgcgatcttactgtaacaaataccttctacatccactggtacctacaccaggag | |
| 56 gggaaggccccacagcgtcttctgtactatgacgtctccactgcaagggatgtgttggaa | |
| 57 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg | |
| 58 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctgggacag | |
| 59 >X15272|TRGV4*01|Homo sapiens|F|V-REGION|406..705|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 60 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa | |
| 61 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag | |
| 62 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa | |
| 63 tcaggaatcagcccagggaagtatgatacttatggaagcacaaggaagaacttgagaatg | |
| 64 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg | |
| 65 >X13354|TRGV4*02|Homo sapiens|F|V-REGION|170..469|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 66 tcttccaacttggaagggagaacgaagtcagtcatcaggcagactgggtcatctgctgaa | |
| 67 atcacttgtgatcttgctgaaggaagtaccggctacatccactggtacctacaccaggag | |
| 68 gggaaggccccacagcgtcttctgtactatgactcctacacctccagcgttgtgttggaa | |
| 69 tcaggaatcagcccagggaagtatgatacttacggaagcacaaggaagaacttgagaatg | |
| 70 atactgcgaaatcttattgaaaatgactctggagtctattactgtgccacctgggatggg | |
| 71 >X13355|TRGV5*01|Homo sapiens|F|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 72 tcttccaacttggaagggggaacgaagtcagtcacgaggccgactaggtcatctgctgaa | |
| 73 atcacttgtgaccttactgtaataaatgccttctacatccactggtacctacaccaggag | |
| 74 gggaaggccccacagcgtcttctgtactatgacgtctccaactcaaaggatgtgttggaa | |
| 75 tcaggactcagtccaggaaagtattatactcatacacccaggaggtggagctggatattg | |
| 76 atactacgaaatctaattgaaaatgattctggggtctattactgtgccacctgggacagg | |
| 77 >M13431|TRGV5P*01|Homo sapiens|P|V-REGION|171..470|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 78 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa | |
| 79 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag | |
| 80 gggaagaccccacagcatcttctgcactatgaagtctccaactcaagggatgtgttggaa | |
| 81 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg | |
| 82 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg | |
| 83 >AF159056|TRGV5P*02|Homo sapiens|P|V-REGION|28623..28922|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 84 tcttccaacttggaagggagaatgaagtcagtcaccaggccgactgggtcatctgctgaa | |
| 85 atcacttgtgaccttactgtaataaatgccgtctacatccactggtacctacagcaggag | |
| 86 gggaagaccccacagcatcttctgcactatgatgtctccaactcaagggatgtgttggaa | |
| 87 tcaggtctcagtcttggaaagtattatactcatacaccgaggaggtggagctggaatttg | |
| 88 agactgcaaaatctaattgaaaatgattctggggtctattactgtgccacctggggcagg | |
| 89 >M13434|TRGV8*01|Homo sapiens|F|V-REGION|180..479|300 nt|1| | | | |300+0=300| |rev-compl| | |
| 90 tcttccaacttggaagggagaacaaagtcagtcaccaggccaactgggtcatcagctgta | |
| 91 atcacttgtgatcttcctgtagaaaatgccgtctacacccactggtacctacaccaggag | |
| 92 gggaaggccccacagcgtcttctgtactatgactcctacaactccagggttgtgttggaa | |
| 93 tcaggaatcagtcgagaaaagtatcatacttatgcaagcacagggaagagccttaaattt | |
| 94 atactggaaaatctaattgaacgtgactctggggtctattactgtgccacctgggatagg | |
| 95 >X07205|TRGV9*01|Homo sapiens|F|V-REGION|178..483|306 nt|1| | | | |306+0=306| |rev-compl| | |
| 96 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc | |
| 97 ctggaatgtgtggtgtctggaataacaatttctgcaacatctgtatattggtatcgagag | |
| 98 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag | |
| 99 gaatccggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc | |
| 100 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg | |
| 101 gaggtg | |
| 102 >X15274|TRGV9*02|Homo sapiens|F|V-REGION|827..1132|306 nt|1| | | | |306+0=306| |rev-compl| | |
| 103 gcaggtcacctagagcaacctcaaatttccagtactaaaacgctgtcaaaaacagcccgc | |
| 104 ctggaatgtgtggtgtctggaataaaaatttctgcaacatctgtatattggtatcgagag | |
| 105 agacctggtgaagtcatacagttcctggtgtccatttcatatgacggcactgtcagaaag | |
| 106 gaatctggcattccgtcaggcaaatttgaggtggataggatacctgaaacgtctacatcc | |
| 107 actctcaccattcacaatgtagagaaacaggacatagctacctactactgtgccttgtgg | |
| 108 gaggtg | |
| 109 >X07208|TRGVA*01|Homo sapiens|P|V-REGION|134..418|285 nt|1| | | | |285+0=285| |rev-compl| | |
| 110 ctcatcaggccggagcagctggcccatgtcctggggcactagggaagcttggtcatcctg | |
| 111 cagtgcgtggtccgcaccaggatcagctacacccactggtaccagcagaagggccaggtc | |
| 112 cctgaggcactccaccagctggccatgtccaagttggatgtgcagtgggattccatcctg | |
| 113 aaagcagataaaatcatagccaaggatggcagcagctctatcttggcagtactgaagttg | |
| 114 gagacaggcatcgagggcatgaactactgcacaacctgggccctg |