Mercurial > repos > davidvanzessen > test_plotting_merged
comparison r_wrapper.sh @ 4:10cfa5e9186e draft
Uploaded
author | davidvanzessen |
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date | Mon, 14 Oct 2013 08:12:41 -0400 |
parents | 0e6f33e21c60 |
children |
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3:d27d745d0556 | 4:10cfa5e9186e |
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19 echo "<table border='1'>" >> $outputFile | 19 echo "<table border='1'>" >> $outputFile |
20 for sample in $samples; do | 20 for sample in $samples; do |
21 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile | 21 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile |
22 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile | 22 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile |
23 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile | 23 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile |
24 mv "$outputDir/HeatmapVD$count.png" "$outputDir/VD_$sample.png" | 24 mv "$outputDir/HeatmapVD_$sample.png" "$outputDir/VD_$sample.png" |
25 echo "<td><img src='VD_$sample.png'/></td>" >> $outputFile | 25 echo "<td><img src='VD_$sample.png'/></td>" >> $outputFile |
26 mv "$outputDir/HeatmapVJ$count.png" "$outputDir/VJ_$sample.png" | 26 mv "$outputDir/HeatmapVJ_$sample.png" "$outputDir/VJ_$sample.png" |
27 echo "<td><img src='VJ_$sample.png'/></td>" >> $outputFile | 27 echo "<td><img src='VJ_$sample.png'/></td>" >> $outputFile |
28 mv "$outputDir/HeatmapDJ$count.png" "$outputDir/DJ_$sample.png" | 28 mv "$outputDir/HeatmapDJ_$sample.png" "$outputDir/DJ_$sample.png" |
29 echo "<td><img src='DJ_$sample.png'/></td></tr>" >> $outputFile | 29 echo "<td><img src='DJ_$sample.png'/></td></tr>" >> $outputFile |
30 count=$((count+1)) | 30 count=$((count+1)) |
31 done | 31 done |
32 echo "</table>" >> $outputFile | 32 echo "</table>" >> $outputFile |
33 | 33 |