comparison trim.py @ 5:35b55f1c0c59 draft

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author davidvanzessen
date Tue, 08 Jul 2014 09:38:54 -0400
parents 8e3d95d7f342
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4:8e3d95d7f342 5:35b55f1c0c59
8 parser.add_argument("--end", help="How many nucleotides to trim from the end", type=int) 8 parser.add_argument("--end", help="How many nucleotides to trim from the end", type=int)
9 9
10 args = parser.parse_args() 10 args = parser.parse_args()
11 start = int(args.start) 11 start = int(args.start)
12 end = int(args.end) 12 end = int(args.end)
13
14 print args.input
15 print args.output
16 print start
17 print end
13 18
14 if end <= 0 and start <= 0: 19 if end <= 0 and start <= 0:
15 import shutil 20 import shutil
16 shutil.copy(args.input, args.output) 21 shutil.copy(args.input, args.output)
17 import sys 22 import sys