Mercurial > repos > davidvanzessen > report_clonality_igg

changeset 2:f8f74848443e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Tue, 28 Jan 2014 07:01:10 -0500
parents 81b9673b29be
children e96fe8edc9c6
files r_wrapper.sh
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/r_wrapper.sh	Tue Jan 28 06:57:38 2014 -0500
+++ b/r_wrapper.sh	Tue Jan 28 07:01:10 2014 -0500
@@ -19,7 +19,7 @@
 
 if [[ "$hasReplicateColumn" == "Yes" ]] ; then
 	echo "<table border='1'><th><td>Sample</td><td>unique</td><td>VH.DEL</td><td>P1</td><td>N1</td><td>P2</td><td>DEL.DH</td><td>DH.DEL</td><td>P3</td><td>N2</td><td>P4</td><td>DEL.JH</td><td>Total.Del</td><td>Total.N</td><td>Total.P</td></th>" >> $outputFile
-	while IFS=, Sample unique VH.DEL P1 N1 P2 DEL.DH DH.DEL P3 N2 P4 DEL.JH Total.Del Total.N Total.P
+	while IFS=, read Sample unique VH.DEL P1 N1 P2 DEL.DH DH.DEL P3 N2 P4 DEL.JH Total.Del Total.N Total.P
 	do
 		echo "<tr><td>$Sample</td><td>$unique</td><td>$VH.DEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DEL.DH</td><td>$DH.DEL</td><td>$P3</td><td>$N2</td><td>$P4</td><td>$DEL.JH</td><td>$Total.Del</td><td>$Total.N</td><td>$Total.P</td></tr>" >> $outputFile
 	done < $outputDir/junctionAnalysis.csv