Mercurial > repos > davidvanzessen > report_clonality_igg
changeset 3:e96fe8edc9c6 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 28 Jan 2014 07:03:30 -0500 |
| parents | f8f74848443e |
| children | 8803239b1770 |
| files | r_wrapper.sh |
| diffstat | 1 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/r_wrapper.sh Tue Jan 28 07:01:10 2014 -0500 +++ b/r_wrapper.sh Tue Jan 28 07:03:30 2014 -0500 @@ -19,9 +19,9 @@ if [[ "$hasReplicateColumn" == "Yes" ]] ; then echo "<table border='1'><th><td>Sample</td><td>unique</td><td>VH.DEL</td><td>P1</td><td>N1</td><td>P2</td><td>DEL.DH</td><td>DH.DEL</td><td>P3</td><td>N2</td><td>P4</td><td>DEL.JH</td><td>Total.Del</td><td>Total.N</td><td>Total.P</td></th>" >> $outputFile - while IFS=, read Sample unique VH.DEL P1 N1 P2 DEL.DH DH.DEL P3 N2 P4 DEL.JH Total.Del Total.N Total.P + while IFS=, read Sample unique VHDEL P1 N1 P2 DELDH DHDEL P3 N2 P4 DELJH TotalDel TotalN TotalP do - echo "<tr><td>$Sample</td><td>$unique</td><td>$VH.DEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DEL.DH</td><td>$DH.DEL</td><td>$P3</td><td>$N2</td><td>$P4</td><td>$DEL.JH</td><td>$Total.Del</td><td>$Total.N</td><td>$Total.P</td></tr>" >> $outputFile + echo "<tr><td>$Sample</td><td>$unique</td><td>$VHDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELDH</td><td>$DHDEL</td><td>$P3</td><td>$N2</td><td>$P4</td><td>$DELJH</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td></tr>" >> $outputFile done < $outputDir/junctionAnalysis.csv echo "</table>" >> $outputFile fi