Mercurial > repos > davidvanzessen > report_clonality_igg
changeset 4:8803239b1770 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 28 Jan 2014 07:07:22 -0500 |
| parents | e96fe8edc9c6 |
| children | 99834201251f |
| files | r_wrapper.sh |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/r_wrapper.sh Tue Jan 28 07:03:30 2014 -0500 +++ b/r_wrapper.sh Tue Jan 28 07:07:22 2014 -0500 @@ -18,7 +18,7 @@ hasReplicateColumn="$(if head -n 1 $inputFile | grep -q 'Replicate'; then echo 'Yes'; else echo 'No'; fi)" if [[ "$hasReplicateColumn" == "Yes" ]] ; then - echo "<table border='1'><th><td>Sample</td><td>unique</td><td>VH.DEL</td><td>P1</td><td>N1</td><td>P2</td><td>DEL.DH</td><td>DH.DEL</td><td>P3</td><td>N2</td><td>P4</td><td>DEL.JH</td><td>Total.Del</td><td>Total.N</td><td>Total.P</td></th>" >> $outputFile + echo "<table border='1'><tr><th>Sample</th><th>unique</th><th>VH.DEL</th><th>P1</th><th>N1</th><th>P2</th><th>DEL.DH</th><th>DH.DEL</th><th>P3</th><th>N2</th><th>P4</th><th>DEL.JH</th><th>Total.Del</th><th>Total.N</th><th>Total.P</th></tr>" >> $outputFile while IFS=, read Sample unique VHDEL P1 N1 P2 DELDH DHDEL P3 N2 P4 DELJH TotalDel TotalN TotalP do echo "<tr><td>$Sample</td><td>$unique</td><td>$VHDEL</td><td>$P1</td><td>$N1</td><td>$P2</td><td>$DELDH</td><td>$DHDEL</td><td>$P3</td><td>$N2</td><td>$P4</td><td>$DELJH</td><td>$TotalDel</td><td>$TotalN</td><td>$TotalP</td></tr>" >> $outputFile