Mercurial > repos > davidvanzessen > report_clonality_igg

diff r_wrapper.sh @ 11:866d22e60e60 draft

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author davidvanzessen
date Thu, 13 Nov 2014 10:33:04 -0500
parents 06777331fbd8
children 24a80d4eff0c
line wrap: on
line diff
--- a/r_wrapper.sh	Thu May 15 09:27:22 2014 -0400
+++ b/r_wrapper.sh	Thu Nov 13 10:33:04 2014 -0500
@@ -6,14 +6,14 @@
 clonalType=$4
 species=$5
 locus=$6
-selection=$7
+filterproductive=$7
 useD="false"
 if [[ "$species" == "human" && "$locus" = "igh" ]] ; then
 	useD="true"
 fi
 dir="$(cd "$(dirname "$0")" && pwd)"
 mkdir $3
-Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputDir $clonalType $species $locus $selection 2>&1
+Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputDir $clonalType $species $locus $filterproductive 2>&1
 cp $dir/tabber.js $outputDir
 cp $dir/style.css $outputDir
 cp $dir/script.js $outputDir