Mercurial > repos > davidvanzessen > mutation_analysis

diff gene_identification.py @ 92:b869a126e2c4 draft

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Uploaded
author davidvanzessen
date Mon, 06 Jun 2016 08:26:54 -0400
parents 0fdd90f7c654
children 53fb2948726e
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--- a/gene_identification.py	Fri Jun 03 10:35:52 2016 -0400
+++ b/gene_identification.py	Mon Jun 06 08:26:54 2016 -0400
@@ -160,9 +160,9 @@
 chunksInCM = len(compiledregex["cm"])
 requiredChunkPercentage = 0.7
 varsInCA = float(len(ca1.keys()) * 2)
-varsInCG = float(len(cg1.keys()) * 2) - 1 # -1 because the sliding window doesn't hit the first nt twice
+varsInCG = float(len(cg1.keys()) * 2) - 2 # -1 because the sliding window doesn't hit the first nt twice
 varsInCM = 0
-requiredVarPercentage = 0.7
+
 
 
 first = True