Mercurial > repos > davidvanzessen > mutation_analysis
comparison aa_histogram.r @ 67:67a9ddf6a8f5 draft
Uploaded
author | davidvanzessen |
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date | Wed, 20 Apr 2016 05:32:45 -0400 |
parents | cb66d6dd1e66 |
children | 564c4f6da203 |
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66:88e0e7665086 | 67:67a9ddf6a8f5 |
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27 | 27 |
28 print(dat_dt) #need this or it will fail???? | 28 print(dat_dt) #need this or it will fail???? |
29 | 29 |
30 print("---------------- plot ----------------") | 30 print("---------------- plot ----------------") |
31 | 31 |
32 #also need these two, I don't even know... | |
33 print(paste("dat_freq", length(dat_freq))) | |
34 print(paste("dat_dt", nrow(dat_dt))) | |
35 | |
32 m = ggplot(dat_dt, aes(x=i, y=freq)) + theme(axis.text.x = element_text(angle = 90, hjust = 1)) | 36 m = ggplot(dat_dt, aes(x=i, y=freq)) + theme(axis.text.x = element_text(angle = 90, hjust = 1)) |
33 m = m + geom_histogram(stat="identity", colour = "black", fill = "darkgrey", alpha=0.8) + scale_x_continuous(breaks=1:length(dat_freq), labels=1:length(dat_freq)) | 37 m = m + geom_histogram(stat="identity", colour = "black", fill = "darkgrey", alpha=0.8) + scale_x_continuous(breaks=1:length(dat_freq), labels=1:length(dat_freq)) |
34 m = m + annotate("segment", x = 0.5, y = -0.05, xend=26.5, yend=-0.05, colour="darkgreen", size=1) + annotate("text", x = 13, y = -0.1, label="FR1") | 38 m = m + annotate("segment", x = 0.5, y = -0.05, xend=26.5, yend=-0.05, colour="darkgreen", size=1) + annotate("text", x = 13, y = -0.1, label="FR1") |
35 m = m + annotate("segment", x = 26.5, y = -0.07, xend=38.5, yend=-0.07, colour="darkblue", size=1) + annotate("text", x = 32.5, y = -0.15, label="CDR1") | 39 m = m + annotate("segment", x = 26.5, y = -0.07, xend=38.5, yend=-0.07, colour="darkblue", size=1) + annotate("text", x = 32.5, y = -0.15, label="CDR1") |
36 m = m + annotate("segment", x = 38.5, y = -0.05, xend=55.5, yend=-0.05, colour="darkgreen", size=1) + annotate("text", x = 47, y = -0.1, label="FR2") | 40 m = m + annotate("segment", x = 38.5, y = -0.05, xend=55.5, yend=-0.05, colour="darkgreen", size=1) + annotate("text", x = 47, y = -0.1, label="FR2") |