Mercurial > repos > davidvanzessen > mutation_analysis

comparison mutation_analysis.py @ 44:4b1bab1a9ad2 draft

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author davidvanzessen
date Tue, 03 Nov 2015 09:45:43 -0500
parents 7304b91757a8
children 5c6b9e99d576
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43:7304b91757a8 44:4b1bab1a9ad2
73 AA_mutation_for_ID = AA_mutation_empty[:] 73 AA_mutation_for_ID = AA_mutation_empty[:]
74 for mutation in mutationListByID[ID]: 74 for mutation in mutationListByID[ID]:
75 if mutation[4]: 75 if mutation[4]:
76 AA_mutation[int(mutation[4])] += 1 76 AA_mutation[int(mutation[4])] += 1
77 AA_mutation_for_ID[int(mutation[4])] += 1 77 AA_mutation_for_ID[int(mutation[4])] += 1
78 o.write(ID + "," + ",".join([str(x) for x in AA_mutation_for_ID]) + "\n") 78 o.write(ID + "\t" + "\t".join([str(x) for x in AA_mutation_for_ID]) + "\n")
79 79
80 80
81 81
82 #for mutation in mutationList: 82 #for mutation in mutationList:
83 # if mutation[4]: # if non silent mutation 83 # if mutation[4]: # if non silent mutation