Mercurial > repos > davidvanzessen > igblast_human

changeset 45:02de9290e324 draft

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Uploaded
author davidvanzessen
date Fri, 22 Nov 2013 07:20:20 -0500
parents cf56df9e5dab
children 9ed2773166cf
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Nov 22 07:20:12 2013 -0500
+++ b/tool_dependencies.xml	Fri Nov 22 07:20:20 2013 -0500
@@ -6,6 +6,8 @@
 	<package name="igBlastn" version="1.0.0"> 
         <install version="1.0">
             <actions>
+				<action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0</action>
+				<action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</action>
             	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
             		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
             	</action>
@@ -21,20 +23,13 @@
                 <action type="set_environment">
                 	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
                 </action>
-
-                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
-                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
-                                
-                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>
+				<action type="shell_command">unzip database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action>
+            	
                 
-                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"</action>
-                
-                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action>
-            	
             </actions>
         </install>
         <readme>
-		Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/
+			Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/
         </readme>
     </package>
 </tool_dependency>