# HG changeset patch
# User davidvanzessen
# Date 1390481456 18000
# Node ID 3c52ce2256c71649a0ad15c6d18fc3487d79cb37
# Parent  76df2ddba9569d91585100583b74ddcaa0f682e9
Uploaded

diff -r 76df2ddba956 -r 3c52ce2256c7 igblastn.sh
--- a/igblastn.sh	Thu Jan 23 07:25:03 2014 -0500
+++ b/igblastn.sh	Thu Jan 23 07:50:56 2014 -0500
@@ -4,4 +4,6 @@
 mkdir $PWD/igblastdatabase
 unzip $dir/database.zip -d $PWD/igblastdatabase/
 
+export IGDATA=$PWD/igblastdatabase/
+
 igblastn -germline_db_V $PWD/igblastdatabase/database/human_gl_V -germline_db_J $PWD/igblastdatabase/database/human_gl_J -germline_db_D $PWD/igblastdatabase/database/human_gl_D -domain_system imgt -query $1 -auxiliary_data $PWD/igblastdatabase/optional_file/human_gl.aux -show_translation -outfmt 3 > $2