Mercurial > repos > davidvanzessen > igblast_human
diff tool_dependencies.xml @ 55:99541760fdfe draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Thu, 23 Jan 2014 05:35:59 -0500 |
| parents | ddc765e7142c |
| children | 33cba576e8be |
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--- a/tool_dependencies.xml Tue Dec 03 04:33:59 2013 -0500 +++ b/tool_dependencies.xml Thu Jan 23 05:35:59 2014 -0500 @@ -21,20 +21,10 @@ <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable> </action> - - <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action> - <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action> - - <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action> - - <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"</action> - - <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action> - </actions> </install> <readme> - Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/ + Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool. </readme> </package> </tool_dependency>