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comparison tool_dependencies.xml @ 37:215aa111db64 draft

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author davidvanzessen
date Tue, 24 Sep 2013 10:42:31 -0400
parents 1d15cd0bd913
children cc443e49b89e
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36:1d15cd0bd913 37:215aa111db64
16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory> 16 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0</destination_directory>
17 </action> 17 </action>
18 <action type="set_environment"> 18 <action type="set_environment">
19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable> 19 <environment_variable name="IGDATA" action="set_to">$INSTALL_DIR/ncbi-igblast-1.0.0</environment_variable>
20 </action> 20 </action>
21
22 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.imgt</action>
23 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.ndm.kabat</action>
24 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.imgt</action>
25 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human.pdm.kabat</action>
26
27 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nhr</action>
28 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nin</action>
29 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nog</action>
30 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsd</action>
31 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsi</action>
32 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.nsq</action>
33 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.phr</action>
34 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pin</action>
35 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.pog</action>
36 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psd</action>
37 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psi</action>
38 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_TR_V.psq</action>
39
40 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V</action>
41 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nhr</action>
42 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nin</action>
43 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nog</action>
44 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsd</action>
45 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsi</action>
46 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.nsq</action>
47 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.phr</action>
48 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pin</action>
49 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.pog</action>
50 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psd</action>
51 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psi</action>
52 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V.psq</action>
53 <action type="download_file">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data/human/human_V_prot</action>
54 21
55 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action> 22 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
56 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action> 23 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
57 24
58 <action type="move_file"> 25 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/internal_data "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>
59 <source>human_V</source> 26 <action type="move_directory_files">
60 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination> 27 <source_directory>internal_data</source_directory>
61 </action> 28 <destination_directory>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</destination_directory>
62 <action type="move_file"> 29 </action>
63 <source>human_V.nhr</source> 30
64 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
65 </action>
66 <action type="move_file">
67 <source>human_V.nin</source>
68 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
69 </action>
70 <action type="move_file">
71 <source>human_V.nog</source>
72 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
73 </action>
74 <action type="move_file">
75 <source>human_V.nsd</source>
76 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
77 </action>
78 <action type="move_file">
79 <source>human_V.nsi</source>
80 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
81 </action>
82 <action type="move_file">
83 <source>human_V.nsq</source>
84 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
85 </action>
86 <action type="move_file">
87 <source>human_V.phr</source>
88 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
89 </action>
90 <action type="move_file">
91 <source>human_V.pin</source>
92 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
93 </action>
94 <action type="move_file">
95 <source>human_V.pog</source>
96 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
97 </action>
98 <action type="move_file">
99 <source>human_V.psd</source>
100 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
101 </action>
102 <action type="move_file">
103 <source>human_V.psi</source>
104 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
105 </action>
106 <action type="move_file">
107 <source>human_V.psq</source>
108 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
109 </action>
110 <action type="move_file">
111 <source>human_V_prot</source>
112 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
113 </action>
114
115
116 <action type="move_file">
117 <source>human.ndm.imgt</source>
118 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
119 </action>
120 <action type="move_file">
121 <source>human.ndm.kabat</source>
122 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
123 </action>
124 <action type="move_file">
125 <source>human.pdm.imgt</source>
126 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
127 </action>
128 <action type="move_file">
129 <source>human.pdm.kabat</source>
130 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
131 </action>
132
133 <action type="move_file">
134 <source>human_TR_V.nhr</source>
135 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
136 </action>
137 <action type="move_file">
138 <source>human_TR_V.nin</source>
139 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
140 </action>
141 <action type="move_file">
142 <source>human_TR_V.nog</source>
143 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
144 </action>
145 <action type="move_file">
146 <source>human_TR_V.nsd</source>
147 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
148 </action>
149 <action type="move_file">
150 <source>human_TR_V.nsi</source>
151 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
152 </action>
153 <action type="move_file">
154 <source>human_TR_V.nsq</source>
155 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
156 </action>
157 <action type="move_file">
158 <source>human_TR_V.phr</source>
159 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
160 </action>
161 <action type="move_file">
162 <source>human_TR_V.pin</source>
163 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
164 </action>
165 <action type="move_file">
166 <source>human_TR_V.pog</source>
167 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
168 </action>
169 <action type="move_file">
170 <source>human_TR_V.psd</source>
171 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
172 </action>
173 <action type="move_file">
174 <source>human_TR_V.psi</source>
175 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
176 </action>
177 <action type="move_file">
178 <source>human_TR_V.psq</source>
179 <destination>$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</destination>
180 </action>
181
182 </actions> 31 </actions>
183 </install> 32 </install>
184 <readme> 33 <readme>
185 Downloads igBlast with the human_V internal data file. 34 Downloads igBlast with the human_V internal data file.
186 </readme> 35 </readme>