Mercurial > repos > davidvanzessen > combined_immune_repertoire_pipeline

comparison combined.sh @ 5:ba2ef103d26e draft

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author davidvanzessen
date Fri, 22 Nov 2013 08:18:55 -0500
parents bb8d5c67c129
children fc186246d291
comparison
equal deleted inserted replaced
4:87fb14480352 5:ba2ef103d26e
1 #!/bin/bash 1 #!/bin/bash
2 2
3 export IGDATA=/home/david/Galaxy/galaxy-dist/toolsheddependencies/igBlastn/1.0.0/davidvanzessen/igblast_human/1c64c977624e/ncbi-igblast-1.0.0/; 3 #export IGDATA=/home/david/Galaxy/galaxy-dist/toolsheddependencies/igBlastn/1.0.0/davidvanzessen/igblast_human/1c64c977624e/ncbi-igblast-1.0.0/;
4 4
5 clonalType=${@:(-3):1} 5 clonalType=${@:(-3):1}
6 html=${@:(-2):1} 6 html=${@:(-2):1}
7 imageDir=${@:(-1):1} 7 imageDir=${@:(-1):1}
8 dir="$(cd "$(dirname "$0")" && pwd)" 8 dir="$(cd "$(dirname "$0")" && pwd)"