Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

changeset 6:8313c6cc65c5 draft

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Uploaded
author davidvanzessen
date Mon, 15 Sep 2014 07:40:52 -0400
parents 9641f3dfc590
children 68c6c7624ffc
files RScript.r
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/RScript.r	Mon Sep 15 05:38:46 2014 -0400
+++ b/RScript.r	Mon Sep 15 07:40:52 2014 -0400
@@ -36,7 +36,7 @@
 patients = split(dat, dat$Patient, drop=T)
 rm(dat)
 intervalReads = rev(c(0,10,25,50,100,1000,10000))
-intervalFreq = rev(c(0,0.01,0.1,0.5,1,5))
+intervalFreq = rev(c(0,0.01,0.05,0.1,0.5,1,5))
 V_Segments = c(".*", "IGHV", "IGHD", "IGKV", "IGKV", "IgKINTR", "TRGV", "TRDV", "TRDD" , "TRBV")
 J_Segments = c(".*", ".*", ".*", "IGKJ", "KDE", ".*", ".*", ".*", ".*", ".*")
 Titles = c("Total", "IGH-Vh-Jh", "IGH-Dh-Jh", "Vk-Jk", "Vk-Kde" , "Intron-Kde", "TCRG", "TCRD-Vd-Dd", "TCRD-Dd-Dd", "TCRB-Vb-Jb")