# HG changeset patch
# User davidvanzessen
# Date 1442242886 14400
# Node ID 2eef2c4385008122d325f197a7055c896cc33c74
# Parent  7d4eda663c29cac79b982dd666fa668c4ab93b71
Uploaded

diff -r 7d4eda663c29 -r 2eef2c438500 RScript.r
--- a/RScript.r	Mon Sep 14 10:56:05 2015 -0400
+++ b/RScript.r	Mon Sep 14 11:01:26 2015 -0400
@@ -179,7 +179,9 @@
       
       length.filter = nchar(patient.fuzzy$Clone_Sequence) - nchar(first.clone.sequence) <= 9
       
-      match.filter = merge.filter & grepl(first.clone.sequence, patient.fuzzy$Clone_Sequence) & length.filter
+      sample.filter = patient.fuzzy[1,"Sample"] != patient.fuzzy$Sample
+      
+      match.filter = merge.filter & grepl(first.clone.sequence, patient.fuzzy$Clone_Sequence) & length.filter & sample.filter
       
       if(sum(match.filter) == 2){
         second.match = which(match.filter)[2]