Mercurial > repos > davidvanzessen > clonal_sequences_in_paired_samples

diff wrapper.sh @ 3:f9316f7676cc draft

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Uploaded
author davidvanzessen
date Tue, 26 Aug 2014 09:53:22 -0400
parents 8d562506f4f9
children f11df36f43bb
line wrap: on
line diff
--- a/wrapper.sh	Mon Aug 25 03:38:07 2014 -0400
+++ b/wrapper.sh	Tue Aug 26 09:53:22 2014 -0400
@@ -3,11 +3,15 @@
 inputFile=$1
 outputFile=$2
 outputDir=$3
+min_freq=$4
+min_cells=$5
 
 dir="$(cd "$(dirname "$0")" && pwd)"
 mkdir $outputDir
 
-Rscript --verbose $dir/RScript.r $inputFile $outputDir 2>&1
+echo "testtestsetset" > $outputFile
+
+Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputFile $min_freq $min_cells 2>&1
 cp $dir/jquery-1.11.0.min.js $outputDir
 cp $dir/script.js $outputDir
 cp $dir/style.css $outputDir