Mercurial > repos > davidvanzessen > change_o
view makedb.sh @ 1:326165da9ece draft
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author | davidvanzessen |
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date | Thu, 04 Aug 2016 08:59:47 -0400 |
parents | dda9b2e72e2b |
children | 6f57d43a1f4c |
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#!/bin/bash dir="$(cd "$(dirname "$0")" && pwd)" input=$1 noparse=$2 scores=$3 regions=$4 output=$5 if [ "true" == "$noparse" ] ; then noparse="--noparse" else noparse="" fi if [ "true" == "$scores" ] ; then scores="--scores" else scores="" fi if [ "true" == "$regions" ] ; then regions="--regions" else regions="" fi mkdir $PWD/outdir #/data/users/david/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions /home/galaxy/anaconda3/bin/python $dir/MakeDb.py imgt -i $input --outdir $PWD/outdir --outname output $noparse $scores $regions mv $PWD/outdir/output_db-pass.tab $output