Mercurial > repos > davidvanzessen > baseline_fasta_generator
view baseline_generator.xml @ 0:91221003f5ee draft
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author | davidvanzessen |
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date | Tue, 15 Jul 2014 08:51:22 -0400 |
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children | 85f18c2f74dd |
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<tool id="baseline_fasta_generator" name="Baseline generator" version="1.0"> <description>Generate baseline fasta file</description> <command interpreter="python"> script.py --input $in_file --ref $reference --output $out_file </command> <inputs> <param name="in_file" type="data" label="Input fasta file" /> <param name="reference" type="data" format="fasta" label="Reference fasta file" /> </inputs> <outputs> <data format="fasta" name="out_file" label = "Baseline generator on $in_file.name with $reference.name"/> </outputs> <help> Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27. Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504. </help> </tool>