Mercurial > repos > davidvanzessen > baseline_fasta_generator

diff script_imgt.py @ 4:aa4b95abef11 draft

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Uploaded
author davidvanzessen
date Wed, 23 Jul 2014 10:13:05 -0400
parents be17e1e7dc2b
children 048f8cdbb6d2
line wrap: on
line diff
--- a/script_imgt.py	Wed Jul 23 07:51:10 2014 -0400
+++ b/script_imgt.py	Wed Jul 23 10:13:05 2014 -0400
@@ -54,7 +54,7 @@
 		for line in i.readlines()[1:]:
 			linesplt = line.split("\t")
 			ref = filterGene(linesplt[1], vPattern)
-			if not ref:
+			if not ref or not linesplt[2].rstrip():
 				continue
 			if ref in outputdic:
 				outputdic[ref] += [(linesplt[0].replace(">", ""), linesplt[2].replace(">", "").rstrip())]