# HG changeset patch
# User davidvanzessen
# Date 1408355691 14400
# Node ID 45a5e3bd9df49c9bd5f96aa00fb98399bb2ef2c3
# Parent  8a4183eed741f84f84f26f53b10c6c7c324b4b44
Uploaded

diff -r 8a4183eed741 -r 45a5e3bd9df4 wrapper.sh
--- a/wrapper.sh	Mon Aug 18 05:28:47 2014 -0400
+++ b/wrapper.sh	Mon Aug 18 05:54:51 2014 -0400
@@ -48,7 +48,7 @@
 		gappedfile="$PWD/gappednt_${id}.txt"
 		filtered="$PWD/filtered_${id}.txt"
 		filecount=`ls -l $PWD/$id/ | wc -l`
-		if [ "$filecount" -eq "1" ]
+		if [[ "$filecount" -eq "2" ]]
 		then
 			cat $PWD/$id/*/1_* > $summaryfile
 			cat $PWD/$id/*/2_* > $gappedfile