diff script_imgt.py @ 5:d8de51314d3f draft

Uploaded

--- a/script_imgt.py	Wed Aug 13 09:09:56 2014 -0400
+++ b/script_imgt.py	Thu Aug 14 07:17:26 2014 -0400
@@ -14,7 +14,7 @@
 with open(args.ref, 'r') as ref:
 	currentSeq = ""
 	currentId = ""
-	for line in ref.readlines():
+	for line in ref:
 		if line[0] is ">":
 			if currentSeq is not "" and currentId is not "":
 				refdic[currentId[1:]] = currentSeq
@@ -48,11 +48,15 @@
 
 currentSeq = ""
 currentId = ""
+first=True
 with open(args.input, 'r') as i:
 	with open(args.output, 'a') as o:
 		o.write(">>>" + args.id + "\n")
 		outputdic = dict()
-		for line in i.readlines()[1:]:
+		for line in i:
+			if first:
+				first = False
+				continue
 			linesplt = line.split("\t")
 			ref = filterGene(linesplt[1], vPattern)
 			if not ref or not linesplt[2].rstrip():