Mercurial > repos > davidvanzessen > baseline_bayesian_estimation
diff wrapper.sh @ 8:525b58fc8622 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 02 Jun 2015 05:02:23 -0400 |
| parents | 45a5e3bd9df4 |
| children | e160483ee900 |
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--- a/wrapper.sh Mon Aug 18 05:54:51 2014 -0400 +++ b/wrapper.sh Tue Jun 02 05:02:23 2015 -0400 @@ -68,6 +68,8 @@ done workdir="$PWD" cd $dir +echo "file: ${inputs[0]}" +#Rscript --verbose $dir/Baseline_Main.r $testID $species $substitutionModel $mutabilityModel $clonal $fixIndels $region ${inputs[0]} $workdir/ $outID 2>&1 Rscript --verbose $dir/Baseline_Main.r $testID $species $substitutionModel $mutabilityModel $clonal $fixIndels $region $fasta $workdir/ $outID 2>&1 echo "$workdir/${outID}.txt"