Mercurial > repos > davidvanzessen > baseline_bayesian_estimation
comparison wrapper.sh @ 14:2d08a1353145 draft default tip
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 04 May 2016 04:06:49 -0400 |
| parents | e160483ee900 |
| children |
comparison
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| 13:7eeb7b808af9 | 14:2d08a1353145 |
|---|---|
| 14 IDs=$9 | 14 IDs=$9 |
| 15 IDs=($IDs) | 15 IDs=($IDs) |
| 16 ref=${10} | 16 ref=${10} |
| 17 output=${11} | 17 output=${11} |
| 18 selection=${12} | 18 selection=${12} |
| 19 output_table=${13} | |
| 19 outID="result" | 20 outID="result" |
| 21 | |
| 22 echo "$PWD" | |
| 20 | 23 |
| 21 echo "testID = $testID" | 24 echo "testID = $testID" |
| 22 echo "species = $species" | 25 echo "species = $species" |
| 23 echo "substitutionModel = $substitutionModel" | 26 echo "substitutionModel = $substitutionModel" |
| 24 echo "mutabilityModel = $mutabilityModel" | 27 echo "mutabilityModel = $mutabilityModel" |
| 87 rows=($rows) | 90 rows=($rows) |
| 88 #unset rows[${#rows[@]}-1] | 91 #unset rows[${#rows[@]}-1] |
| 89 | 92 |
| 90 cd $dir | 93 cd $dir |
| 91 Rscript --verbose $dir/comparePDFs.r $workdir/${outID}.RData $output ${rows[@]} 2>&1 | 94 Rscript --verbose $dir/comparePDFs.r $workdir/${outID}.RData $output ${rows[@]} 2>&1 |
| 95 cp $workdir/result.txt ${output_table} | |
| 92 | 96 |
| 93 | 97 |
| 94 | 98 |
| 95 | 99 |
| 96 |