comparison baseline.xml @ 3:38c038c17d0c draft

Uploaded

2:94fada165724

		"
		#for $i, $input in enumerate($inputs)
 ${input.id}
		#end for 
		"
    $reference $out_file
	</command>
	<inputs>
		<repeat name="inputs" title="inputs" min="1" default="1">
			<param name="in_file" type="data" label="Input excel or IMGT zip file" />
			<param name="id" type="text" label="ID (alpha-numeric, no spaces)" />

		</param>
		<param name="boundaries" type="select" label="FWR/CDR3 Boundaries">
			<option value="1:26:38:55:65:104:-">IMGT® No CDR3</option>
			<option value="1:26:38:55:65:104:116">IMGT®</option>
		</param>
	</inputs>
	<outputs>
		<data format="pdf" name="out_file" label = "Baseline on ${on_string}"/>
	</outputs>
	<help>

3:38c038c17d0c

		"
		#for $i, $input in enumerate($inputs)
 ${input.id}
		#end for 
		"
    $reference $out_file "$selection"
	</command>
	<inputs>
		<repeat name="inputs" title="inputs" min="1" default="1">
			<param name="in_file" type="data" label="Input excel or IMGT zip file" />
			<param name="id" type="text" label="ID (alpha-numeric, no spaces)" />

		</param>
		<param name="boundaries" type="select" label="FWR/CDR3 Boundaries">
			<option value="1:26:38:55:65:104:-">IMGT® No CDR3</option>
			<option value="1:26:38:55:65:104:116">IMGT®</option>
		</param>
		<param name="selection" type="select" label="Unique Selection Definition">
			<option value="VGene,AA.JUNCTION">VGene, AA CDR3</option>
			<option value="VGene,JGene,AA.JUNCTION">VGene, JGene, AA CDR3</option>
			<option value="VGene,DGene,JGene,CDR3.Seq">VGene, DGene, JGene, AA CDR3</option>
			<option value="Sequence.ID">None</option>
		</param>
	</inputs>
	<outputs>
		<data format="pdf" name="out_file" label = "Baseline on ${on_string}"/>
	</outputs>
	<help>