comparison baseline.xml @ 14:2d08a1353145 draft default tip

Uploaded

13:7eeb7b808af9

		"
		#for $i, $input in enumerate($inputs)
 ${input.id}
		#end for 
		"
    $reference $out_file "$selection"
	</command>
	<inputs>
		<repeat name="inputs" title="inputs" min="1" default="1">
			<param name="in_file" type="data" label="Input excel or IMGT zip file" />
			<param name="id" type="text" label="ID (alpha-numeric, no spaces)" />

			<option value="VGene,DGene,JGene,AA.JUNCTION">VGene, DGene, JGene, AA CDR3</option>
			<option value="Sequence.ID">None</option>
		</param>
	</inputs>
	<outputs>
		<data format="pdf" name="out_file" label = "Baseline on ${on_string}"/>
	</outputs>
	<help>
			Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27.

			Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504.

14:2d08a1353145

		"
		#for $i, $input in enumerate($inputs)
 ${input.id}
		#end for 
		"
    $reference $out_file "$selection" "$out_table"
	</command>
	<inputs>
		<repeat name="inputs" title="inputs" min="1" default="1">
			<param name="in_file" type="data" label="Input excel or IMGT zip file" />
			<param name="id" type="text" label="ID (alpha-numeric, no spaces)" />

			<option value="VGene,DGene,JGene,AA.JUNCTION">VGene, DGene, JGene, AA CDR3</option>
			<option value="Sequence.ID">None</option>
		</param>
	</inputs>
	<outputs>
		<data format="pdf" name="out_file" label = "Baseline PDF on ${on_string}"/>
		<data format="tabular" name="out_table" label = "Baseline Table on ${on_string}"/>
	</outputs>
	<help>
			Gur Yaari; Mohamed Uduman; Steven H. Kleinstein. Quantifying selection in high-throughput Immunoglobulin sequencing data sets. Nucleic Acids Res. 2012 May 27.

			Mohamed Uduman; Gur Yaari; Uri Hershberg; Mark J. Shlomchik; Steven H. Kleinstein. Detecting selection in immunoglobulin sequences. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W499-504.