# HG changeset patch
# User davidvanzessen
# Date 1438949262 14400
# Node ID dca3273a7291120d807116d8f4a8eafb8dd13250
# Parent  b45a7424862863b1646340dedc11f0176e3da50b
Uploaded

diff -r b45a74248628 -r dca3273a7291 igblast/igblast.sh
--- a/igblast/igblast.sh	Fri Aug 07 05:52:21 2015 -0400
+++ b/igblast/igblast.sh	Fri Aug 07 08:07:42 2015 -0400
@@ -10,6 +10,6 @@
 
 echo "$input $species $locus $output"
 
-java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output 2>&1
+java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -S $species -R $locus ${input} $PWD/blasted_output 2>&1
 
 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1