# HG changeset patch
# User davidvanzessen
# Date 1453969286 18000
# Node ID d3d4823c101a8706acec21d6f603f1a03312c7f0
# Parent  2a79f9adf89baab7ce56f9feeea4713a0c98508d
Uploaded

diff -r 2a79f9adf89b -r d3d4823c101a complete.sh
--- a/complete.sh	Wed Jan 27 10:48:31 2016 -0500
+++ b/complete.sh	Thu Jan 28 03:21:26 2016 -0500
@@ -8,7 +8,7 @@
 locus=$6
 filterproductive=$7
 clonality_method=$8
-
+filter_uniques=$9
 
 html=$2
 dir="$(cd "$(dirname "$0")" && pwd)"
@@ -64,5 +64,5 @@
 
 echo "after ED"
 
-bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method
+bash $dir/report_clonality/r_wrapper.sh $PWD/merged.txt $2 $outputDir $clonalType "$species" "$locus" $filterproductive $clonality_method $filter_uniques