$sample | " >> $2
-
- echo "$((all+removed)) | " >> $2
- echo "${removed} (${perc_rem}%) | " >> $2
echo "$all | " >> $2
echo "$productive (${perc_prod}%) | " >> $2
echo "$productive_unique (${perc_prod_un}%) | " >> $2
diff -r 379856bef228 -r 5ba0377b7737 report_clonality_igg.xml
--- a/report_clonality_igg.xml Fri Jan 29 05:39:58 2016 -0500
+++ b/report_clonality_igg.xml Fri Jan 29 08:10:21 2016 -0500
@@ -2,9 +2,9 @@
#if $gene_selection.source == "imgtdb"
- report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method $filter_uniques
+ report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "${gene_selection.species}" "${gene_selection.locus}" $filterproductive $clonality_method
#else
- report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method $filter_uniques
+ report_clonality/r_wrapper.sh $in_file $out_file $out_file.files_path "$clonaltype" "custom" "${gene_selection.vgenes};${gene_selection.dgenes};${gene_selection.jgenes}" $filterproductive $clonality_method
#end if
@@ -95,11 +95,6 @@
-
-
-
-
-