# HG changeset patch
# User davidvanzessen
# Date 1452679532 18000
# Node ID 2d38d7c1d0d0d4e332931ab0c1a114e8118d97e0
# Parent  88fde3136025128a68715d0646400a2d22dd0175
Uploaded

diff -r 88fde3136025 -r 2d38d7c1d0d0 imgt_loader/imgt_loader.py
--- a/imgt_loader/imgt_loader.py	Tue Jan 12 10:21:55 2016 -0500
+++ b/imgt_loader/imgt_loader.py	Wed Jan 13 05:05:32 2016 -0500
@@ -27,7 +27,7 @@
 added_summary_columns = [u'Functionality', u'V-REGION identity %', u'V-REGION identity nt', u'D-REGION reading frame', u'AA JUNCTION', u'Functionality comment', u'Sequence']
 added_sequence_columns = [u'FR1-IMGT', u'FR2-IMGT', u'FR3-IMGT', u'CDR3-IMGT', u'JUNCTION', u'J-REGION', u'FR4-IMGT']
 added_junction_columns = [u"P3'V-nt nb", u'N-REGION-nt nb', u'N1-REGION-nt nb', u"P5'D-nt nb", u"P3'D-nt nb", u'N2-REGION-nt nb', u"P5'J-nt nb", u"3'V-REGION trimmed-nt nb", 
-						  u"5'D-REGION trimmed-nt nb", u"3'D-REGION trimmed-nt nb", u"5'J-REGION trimmed-nt nb"]
+						  u"5'D-REGION trimmed-nt nb", u"3'D-REGION trimmed-nt nb", u"5'J-REGION trimmed-nt nb", u"N-REGION", u"N1-REGION", u"N2-REGION"]
 
 outFile = args.output
 
@@ -68,7 +68,7 @@
 					u'CDR3 Seq DNA', u'CDR3 Length DNA', u'Strand', u'CDR3 Found How', u'Functionality', 'V-REGION identity %', 'V-REGION identity nt', 'D-REGION reading frame', 
 					'AA JUNCTION', 'Functionality comment', 'Sequence', 'FR1-IMGT', 'FR2-IMGT', 'FR3-IMGT', 'CDR3-IMGT', 'JUNCTION', 'J-REGION', 'FR4-IMGT', 'P3V-nt nb', 
 					'N-REGION-nt nb', 'N1-REGION-nt nb', 'P5D-nt nb', 'P3D-nt nb', 'N2-REGION-nt nb', 'P5J-nt nb', '3V-REGION trimmed-nt nb', '5D-REGION trimmed-nt nb', '3D-REGION trimmed-nt nb', 
-					'5J-REGION trimmed-nt nb']
+					'5J-REGION trimmed-nt nb', "N-REGION", "N1-REGION", "N2-REGION"]
 
 """
 IGHV[0-9]-[0-9ab]+-?[0-9]?D?