# HG changeset patch
# User davidvanzessen
# Date 1453909711 18000
# Node ID 2a79f9adf89baab7ce56f9feeea4713a0c98508d
# Parent  188712b1735fe02e4b75509c6b8e90f72ab4afab
Uploaded

diff -r 188712b1735f -r 2a79f9adf89b complete_immunerepertoire.xml
diff -r 188712b1735f -r 2a79f9adf89b report_clonality/RScript.r
--- a/report_clonality/RScript.r	Wed Jan 27 10:41:38 2016 -0500
+++ b/report_clonality/RScript.r	Wed Jan 27 10:48:31 2016 -0500
@@ -43,6 +43,8 @@
 clonality_method = args[8]
 filter_uniques = args[9]
 
+print(paste("filter_uniques", filter_uniques))
+
 # ---------------------- Data preperation ----------------------
 
 print("Report Clonality - Data preperation")
@@ -64,6 +66,8 @@
 
 filter_uniques = filter_uniques == "yes" && c("CDR1.Seq", "CDR2.Seq", "CDR3.Seq", "FR1.IMGT", "FR2.IMGT", "FR3.IMGT") %in% names(inputdata)
 
+print(paste("filter_uniques", filter_uniques))
+
 if(filter_uniques){
 	
 	clmns = names(inputdata)