# HG changeset patch
# User davidvanzessen
# Date 1438264808 14400
# Node ID 079eed22fdb66ae9c9636873a21d347787d2a2fa
# Parent  34d5e6df3247f1f511f459ab49ce00fb0ab4392b
Uploaded

diff -r 34d5e6df3247 -r 079eed22fdb6 igblast/igblast.sh
--- a/igblast/igblast.sh	Thu Jul 30 09:56:17 2015 -0400
+++ b/igblast/igblast.sh	Thu Jul 30 10:00:08 2015 -0400
@@ -10,6 +10,6 @@
 
 echo "$input $species $locus $output"
 
-java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output
+java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -cf -S $species -R $locus ${input} $PWD/blasted_output 2>&1
 
 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1