view igparse.xml @ 47:d97e1421aa86 draft

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<tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
	<description> </description>
	<command interpreter="perl">
		igblastparser/igparse.pl $input 0 2>/dev/null | grep -v "D:" | cut -f2- > $output
	</command>
	<inputs>
		<param name="input" type="data" format="text" label="igBLASTn report"/>
	</inputs>
	<outputs>
		<data name="output" format="tabular" label="${input.name}-parsed" />
	</outputs>
	<help>
		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
	</help>
</tool>