Mercurial > repos > davidvanzessen > argalaxy_tools

diff report_clonality/r_wrapper.sh @ 17:ee1bda8c27c8 draft

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author davidvanzessen
date Mon, 09 Nov 2015 08:28:31 -0500
parents f90fbc15b35a
children f2010de70741
line wrap: on
line diff
--- a/report_clonality/r_wrapper.sh	Fri Nov 06 05:12:17 2015 -0500
+++ b/report_clonality/r_wrapper.sh	Mon Nov 09 08:28:31 2015 -0500
@@ -137,7 +137,7 @@
 	echo "</div></div>" >> $outputFile
 fi
 
-hasJunctionData="$(if head -n 1 $inputFile | grep -q '3V-REGION trimmed-nt nb'; then echo 'Yes'; else echo 'No'; fi)"
+hasJunctionData="$(if head -n 1 $inputFile | grep -qE '3V.REGION.trimmed.nt.nb'; then echo 'Yes'; else echo 'No'; fi)"
 
 if [[ "$hasJunctionData" == "Yes" ]] ; then
 	echo "<div class='tabbertab' title='Junction Analysis'>" >> $outputFile