Mercurial > repos > davidvanzessen > argalaxy_tools

diff report_clonality_igg.xml @ 70:6fdafffd7f0f draft

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author davidvanzessen
date Wed, 17 Aug 2016 08:16:55 -0400
parents a073fa12ef98
children
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--- a/report_clonality_igg.xml	Mon Aug 08 08:53:33 2016 -0400
+++ b/report_clonality_igg.xml	Wed Aug 17 08:16:55 2016 -0400
@@ -11,11 +11,12 @@
 		<param name="in_file" format="tabular" type="data" label="Data to Process" />
 		<param name="clonaltype" type="select" label="Clonal Type Definition (Needed for clonality calculation)">
 			<option value="none">Don't remove duplicates based on clonaltype</option>
-			<option value="Top.V.Gene,CDR3.Seq">Top.V.Gene, CDR3.Seq</option>
+			<option value="Top.V.Gene,CDR3.Seq">Top.V.Gene, CDR3.AA.Seq</option>
 			<option value="Top.V.Gene,CDR3.Seq.DNA">Top.V.Gene, CDR3.Seq.DNA</option>
-			<option value="Top.V.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.J.Gene, CDR3.Seq</option>
+			<option value="Top.V.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.J.Gene, CDR3.AA.Seq</option>
 			<option value="Top.V.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.J.Gene, CDR3.Seq.DNA</option>
 			<option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq.DNA">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3.Seq.DNA</option>
+			<option value="Top.V.Gene,Top.D.Gene,Top.J.Gene,CDR3.Seq">Top.V.Gene, Top.D.Gene, Top.J.Gene, CDR3.AA.DNA</option>
 		</param>
 		
 		<conditional name="gene_selection" >
@@ -85,7 +86,7 @@
 			</when>
 		</conditional>
 		
-		<param name="filterproductive" type="select" label="Filter out the unproductive sequences">
+		<param name="filterproductive" type="select" label="Remove the unproductive sequences from graphs ">
 			<option value="yes">Yes</option>
 			<option value="no">No</option>
 		</param>