Mercurial > repos > davidvanzessen > argalaxy_tools
diff report_clonality/RScript.r @ 50:2a79f9adf89b draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 27 Jan 2016 10:48:31 -0500 |
| parents | d08dfc8d5225 |
| children | 371c568408e9 |
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--- a/report_clonality/RScript.r Wed Jan 27 10:41:38 2016 -0500 +++ b/report_clonality/RScript.r Wed Jan 27 10:48:31 2016 -0500 @@ -43,6 +43,8 @@ clonality_method = args[8] filter_uniques = args[9] +print(paste("filter_uniques", filter_uniques)) + # ---------------------- Data preperation ---------------------- print("Report Clonality - Data preperation") @@ -64,6 +66,8 @@ filter_uniques = filter_uniques == "yes" && c("CDR1.Seq", "CDR2.Seq", "CDR3.Seq", "FR1.IMGT", "FR2.IMGT", "FR3.IMGT") %in% names(inputdata) +print(paste("filter_uniques", filter_uniques)) + if(filter_uniques){ clmns = names(inputdata)