Mercurial > repos > davidvanzessen > argalaxy_tools
diff tool_dependencies.xml @ 11:0510cf1f7cbc draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 04 Aug 2015 09:59:26 -0400 |
| parents | c5cffbd8fe9d |
| children | 010402c959aa |
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--- a/tool_dependencies.xml Fri Jul 31 08:08:05 2015 -0400 +++ b/tool_dependencies.xml Tue Aug 04 09:59:26 2015 -0400 @@ -1,28 +1,24 @@ <?xml version="1.0"?> <tool_dependency> - <package name="igblastwrp" version="0.6"> + <set_environment version="1.0"> + </set_environment> + + <package name="blastn" version="1.0"> <install version="1.0"> <actions> - <action type="download_by_url">https://github.com/mikessh/higblast/releases/download/v0.6/igblastwrapper_linux64.tar.gz</action> - <action type="move_file"> - <source>bin</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="move_file"> - <source>data</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="move_file"> - <source>igblastwrp.jar</source> - <destination>$INSTALL_DIR/</destination> - </action> - <action type="set_environment"> - <environment_variable name="IGBLASTWRP" action="set_to">$INSTALL_DIR/</environment_variable> - </action> + <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz</action> + <action type="move_file"> + <source>bin/blastn</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="set_environment"> + <environment_variable name="BLASTN_DIR" action="set_to">$INSTALL_DIR</environment_variable> + </action> </actions> </install> <readme> -Downloads https://github.com/mikessh/higblast/ + downloads blast (ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.30/ncbi-blast-2.2.30+-x64-linux.tar.gz) and keeps the blastn executable </readme> </package> </tool_dependency> +