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comparison igblast/igblast.sh @ 15:6e068ef43336 draft

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author davidvanzessen
date Fri, 07 Aug 2015 08:42:58 -0400
parents dca3273a7291
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14:dca3273a7291 15:6e068ef43336
8 output=$4 8 output=$4
9 9
10 10
11 echo "$input $species $locus $output" 11 echo "$input $species $locus $output"
12 12
13 java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -S $species -R $locus ${input} $PWD/blasted_output 2>&1 13 java -Xmx64G -jar $IGBLASTWRP/igblastwrp.jar -p 4 -S $species -R $locus ${input} $PWD/blasted_output 2>&1
14 14
15 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1 15 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1