Mercurial > repos > david-hoover > mirdeep2_and_targetspy

diff target_spy_wrapper.sh @ 0:1bdefe8a8676 draft default tip

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author david-hoover
date Fri, 18 Jul 2014 13:55:59 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/target_spy_wrapper.sh	Fri Jul 18 13:55:59 2014 -0400
@@ -0,0 +1,4 @@
+export PATH=/data/galaxy/appList/ViennaRNA/1.6.1/bin:/data/galaxy/appList/TargetSpy/bin:$PATH
+
+TargetSpy -microRNAs $1 -transcripts $2 -result targets
+gunzip targets.gz