diff export_local_file.xml @ 8:01687750c862 draft

Uploaded

--- a/export_local_file.xml	Thu Oct 04 14:48:02 2012 -0400
+++ b/export_local_file.xml	Thu May 01 17:11:57 2014 -0400
@@ -1,10 +1,12 @@
 <?xml version="1.0"?>
-<tool id="export_local_file" name="Export dataset" version="1.1.0">
+<tool id="export_local_file" name="Export dataset" version="1.2.0">
   <description>to a local filesytem</description>
   <command interpreter="sh">export_local_file.sh $input '$filepath' $userEmail $output</command>
   <inputs>   
     <param name="input" type="data" label="Dataset"/>
-    <param name="filepath" type="text" size="100" label="Absolute file path" />
+    <param name="filepath" type="text" size="100" label="Absolute file path" value="/home/foo/blah">
+      <validator type="expression" message="The path must begin with either /home or /data">value.lower()[0:5] == '/home' or value.lower()[0:5] == '/data'</validator>
+    </param>
   </inputs>
   <outputs>
     <data format="txt" name="output" label="local export: $filepath" />
@@ -15,7 +17,7 @@
 
 **Copying files**
 
-This tool will allow you to export a single file from Galaxy to a local filesystem.
+This tool will allow you to export a single file from Galaxy to a local filesystem on Helix or Biowulf.
 You must have permission to write the file to the given directory, and the file must not yet exist.  This tool will
 not overwrite a pre-existing file.
 
@@ -26,6 +28,8 @@
 - The file path must be a file, not a directory
 - You must give the fullpath to the file (/home/user/myfile.txt, not ./myfile.txt)
 - You must have permission to write the file in the given directory
+- Only /home or /data directories are allowed.
+- The directories must exist on Helix or Biowulf!
 
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