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1 <?xml version="1.0"?>
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2 <tool id="import_local_file" name="Import local file">
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3 <description>from a local filesystem</description>
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4 <command interpreter="sh">import_local_file.sh '$filepath' $output $userEmail</command>
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5 <inputs>
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6 <param name="filepath" type="text" size="100" label="Absolute file path" />
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7 </inputs>
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8 <outputs>
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9 <data format="txt" name="output" label="local import: $filepath" />
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10 </outputs>
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11 <help>
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12
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13 .. class:: infomark
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14
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15 **Copying files**
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16
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17 This tool will allow you to upload a single file that is locally available. There is no browse function,
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18 however, so you will need to give the full path name. If you have permission to read the file, Galaxy can import the file.
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19
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20 .. class:: warningmark
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21
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22 **Important Notes**
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23
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24 - The file path must be a file, not a directory
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25 - You must give the fullpath to the file (/home/user/myfile.txt, not ./myfile.txt)
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26 - You must have permission to read the file
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27
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28 -----
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29
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30 **Example**
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31
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32 - /home/user/bamfiles/abc123.bam
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33 - /data/anotheruser/data/good_data/very_good_data.txt
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34
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35 </help>
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36 </tool>
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