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1 ###
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2 ### The shell script: import_local.sh
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3 ###
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4 ### The script copies the source file (param 1)
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5 ### to the destination file (param 2, which is galaxy's dataset_NNNNN.dat).
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6 ###
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7 ### The extra code tries to make it as safe as possible, allowing imports only
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8 ### from limited areas.
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9 ###
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10 ### The script can be changed from copying to linking - would be even faster.
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11 ###
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12 ### cpx is a C executable that copies a file from a source to a destination
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13 ### only if the source file is readable by the user given in the third arg.
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14 ### cpx must be setuid root, so be careful who has access to it! It can also
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15 ### be allowed using sudo, if you know how to do it.
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16 #!/bin/sh
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17
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18 INPUT="$1"
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19 OUTPUT="$2"
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20 EMAIL="$3"
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21 USER=`echo $EMAIL | sed -e 's#@.*##'`
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22
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23 if [ -z "$OUTPUT" ]; then
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24 echo "Usage: $0 [INPUT] [OUTPUT]" >&2
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25 exit 1
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26 fi
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27
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28 # Filter any unwanted directories
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29
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30 if [[ `echo $INPUT | grep -c ^/data/` -lt 1 ]] && [[ `echo $INPUT | grep -c ^/home/` -lt 1 ]] ; then
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31 echo "Error: \"$INPUT\" is not allowed" >&2
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32 exit 1
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33 fi
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34
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35 # Do the deed
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36 cpx $INPUT $OUTPUT "$USER"
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37 if [ $? != 0 ]; then
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38 echo "Error: $USER failed to copy \"$INPUT\"" >&2
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39 exit 1
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40 fi
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41
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42 echo "File \"$INPUT\" imported"
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43
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44 exit 0
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45
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46 ###
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47 ###
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48 ###
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49
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