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diff README @ 11:432aafa6830a draft

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author david-hoover
date Wed, 12 Sep 2012 17:54:46 -0400
parents b138c5569231
children
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--- a/README	Wed Sep 12 12:38:51 2012 -0400
+++ b/README	Wed Sep 12 17:54:46 2012 -0400
@@ -5,5 +5,8 @@
 Additionally, copies of or links to the GenomeAnalysisTK.jar and key file
 must be made within the directory tool-data/shared/jars/gatk2.
 
-  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/GenomeAnalysisTK.jar
-  ${GALAXY_DATA_INDEX_DIR}/shared/jars/gatk2/gatk2_key_file
+  cd ${GALAXY_DATA_INDEX_DIR}/shared/jars
+  mkdir gatk2
+  cd gatk2
+  ln -s /path/to/wherever/GenomeAnalysisTK.jar .
+  ln -s /path/to/wherever/key.file gatk2_key_file