Mercurial > repos > dave > tn93

comparison readreduce.xml @ 1:0a4d18edbdd2 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/tn93/ commit f009487e8fec49f10396185ffd2fc4fe65bf4f29-dirty
author dave
date Wed, 20 Mar 2019 13:04:30 -0400
parents 08f2130e39b3
children
comparison
equal deleted inserted replaced
0:08f2130e39b3 1:0a4d18edbdd2
12 -a $options.ambigs 12 -a $options.ambigs
13 -l $options.overlap 13 -l $options.overlap
14 #if $options.counts_in_name: 14 #if $options.counts_in_name:
15 -d '$options.counts_in_name' 15 -d '$options.counts_in_name'
16 #end if 16 #end if
17 -s '$size' 17 -s '$options.size'
18 #end if 18 #end if
19 '$input' 19 '$input'
20 ]]></command> 20 ]]></command>
21 <inputs> 21 <inputs>
22 <param name="input" type="data" format="fasta" label="Input in FASTA format" /> 22 <param name="input" type="data" format="fasta" label="Input in FASTA format" />
27 </param> 27 </param>
28 <when value="defaults" /> 28 <when value="defaults" />
29 <when value="advanced"> 29 <when value="advanced">
30 <param name="size" argument="-s" type="integer" min="0" value="18" label="Mimimum cluster size to report in output" /> 30 <param name="size" argument="-s" type="integer" min="0" value="18" label="Mimimum cluster size to report in output" />
31 <param name="ambigs" argument="-a" type="select" label="Strategy for ambiguous nucleotides"> 31 <param name="ambigs" argument="-a" type="select" label="Strategy for ambiguous nucleotides">
32 <option value="handle">handle</option>
33 <option value="resolve">resolve</option> 32 <option value="resolve">resolve</option>
34 <option value="average">average</option> 33 <option value="average">average</option>
35 <option value="skip">skip</option> 34 <option value="skip">skip</option>
36 <option value="gapmm">gapmm</option> 35 <option value="gapmm">gapmm</option>
37 </param> 36 </param>